IDEAL

Metadata Harmonization

Configuration

Data Model

Processing Status

Model Alignment Score (MAS)

Original

N/A

Harmonized

N/A

Original Metadata

{
  "sample_01": {
    "title": [
      "Lung adenocarcinoma 07L66_T (methylation)"
    ],
    "geo_accession": [
      "GSM813257"
    ],
    "status": [
      "Public on Mar 21 2012"
    ],
    "submission_date": [
      "Oct 11 2011"
    ],
    "last_update_date": [
      "Mar 21 2012"
    ],
    "type": [
      "genomic"
    ],
    "channel_count": [
      "1"
    ],
    "source_name_ch1": [
      "Lung adenocarcinoma"
    ],
    "organism_ch1": [
      "Homo sapiens"
    ],
    "taxid_ch1": [
      "9606"
    ],
    "sample id": "T45",
    "tissue source": "nci-edrn",
    "bisulfite plate": "31",
    "beadchip": "8",
    "beadstrip": "H",
    "bisulfite alu": "15.03467",
    "age": "74",
    "tissue": "Lung tumor",
    "gender": "Female",
    "ethnicity": "White",
    "pack years": "55",
    "smoking status": "Current",
    "Stage": "Stage IA",
    "recurrence": "No",
    "kras mutation status": "MUT",
    "egfr mutation status": "WT",
    "lkb1 mutation status": "WT",
    "kras mutation type": "G12D",
    "subject": "07L66",
    "treatment_protocol_ch1": [
      "Bisulfite treatment"
    ],
    "growth_protocol_ch1": [
      "Fresh-frozen tissue"
    ],
    "molecule_ch1": [
      "genomic DNA"
    ],
    "extract_protocol_ch1": [
      "Genomic DNA was extracted after macrodissection and a proteinase K digstion by  phenol-chloroform"
    ],
    "label_ch1": [
      "Cy3 and Cy5"
    ],
    "label_protocol_ch1": [
      "Standard Illumina protocol"
    ],
    "hyb_protocol": [
      "Standard Illumina protocol performed at the USC Epigenome Center"
    ],
    "scan_protocol": [
      "Standard Illumina scan protocol performed at the USC Epigenome Center"
    ],
    "platform_id": [
      "GPL8490"
    ],
    "series_id": [
      "GSE32861",
      "GSE32867"
    ],
    "data_row_count": [
      "27578"
    ]
  }
}

About us

Feedback

Products

IDEAL

ITAM